• Executables for: Linux , Mac (Power PC), Mac (Intel), Windows
• Manual: Plain text
• Sample dataset: Zip file
• Source code: DupTree is open source! Please email either Andre Wehe or Mukul Bansal for the source code.

DupTree can be cited as follows:
DupTree: A program for large-scale phylogenetic analyses using gene tree parsimony
   Andre Wehe, Mukul S. Bansal, J. G. Burleigh, Oliver Eulenstein.
   Bioinformatics, 24(13): 1540-1541, 2008.

NOTE: DupTree is now also available as part of the software package iGTP, which is a graphical program for performing gene tree parsimony analysis under the duplication, duplication+loss, and deep coalescence reconciliation cost models. You can read more about iGTP here.

Contact: Andre Wehe (awehe@iastate.edu) or Mukul Bansal (mukul@csail.mit.edu)