Interesting Links

CBLab Wiki

• Computational Biology lab Wiki

Phylota Website

• Phylota: "Tree of Life" project web site maintained by our collaborator Dr. Mike Sanderson

Phylogenetic databases

• TreeBASE
• Tree of Life
• NCBI Taxonomy
• EMBL sequence alignment database

Molecular sequence databases

• GenBank
• EMBL
• Swiss-Prot and TrEMBL

Cluster set databases

• SYSTERS -- protein clusters from Swiss-Prot, TrEMBL, wormpep, flybase
• CluSTr -- protein clusters from complete prokaryotic and eukaryotic genomes
• COG -- clusters of orthologous genes (proteins) based on complete genomes

Online supertree construction software

• Rod Page's Supertree Server -- Online software to build mincut and modified mincut supertrees
• r8s software -- Generates combined matrix representations of trees from tree file