Download

DupTree

• DupTree, a program for large scale gene tree parsimony analysis, is available here.

Maximal Biclique Enumeration Algorithm

• Algorithm description
• Source code and test cases

Contact: Wen-Cheih Chang (wcchang@iastate,edu)

HeuristicMRF2: Matrix Representation with Flipping (MRF) version 2

• Source code

Contact: Duhong Chen (duhong@iastate.edu)

Quartet Suite v1.0 (Supertrees by Quartets)

• README & Example (9 kb)
• Source code & makefile (27 kb)
• Windows binaries (120 kb)
• Mac OS X binaries (112 kb)

Contact: Raul Piaggio (rpiaggio[at]iastate[dot]edu)

Rainbow beta 1.2

Current version: beta 1.2, released on 2004-01-13. Available downloads:

• Windows installer (1.7 MB)
• Mac OS X disk image (10 MB)
• Redhat 9.0 Linux i686 binary executable (3.4 MB)
• Rainbow Manual  (html version and pdf file)
• Source code:

  MS-Windows (using wxWidgets-2.4 library, compiled with Visual C++ 6). Click here to download Windows version source code.

  Unix/Mac OS X ( using Qt-3.3 library, compiled with g++3 under Redhat 9.0, and Mac OS X 10.3.3)

. Click here to download Unix version source code.

Contact: Duhong Chen (duhong@iastate.edu)